trim21 flag  (Sino Biological)

Journal: Communications Biology

Article Title: TRIM21 promotes K63-linked ubiquitination of ALKBH5 and suppresses cuproptosis via down-regulation of LIAS in esophageal squamous cell carcinoma

doi: 10.1038/s42003-025-09201-6

Figure Lengend Snippet: A Expression of Tripartite Motif Containing family across TCGA-ESCA datasets. B Expression profiles of TRIM21 across TCGA datasets. C GO enrichment analysis of TRIM21 correlated genes. D Immunoprecipitation of TRIM21 followed by Coomassie blue staining. E Partial mass spectrometry results following TRIM21 co-immunoprecipitation (co-ip). F Co-immunoprecipitation (co-IP) followed by western blot analysis of TRIM21 and ALKBH5. G GST-Pull down of indicated proteins, demonstrating the molecular binding of TRIM21 and ALKBH5 in vitro. H Plasmids overexpressing ALKBH5-Flag, TRIM21-Myc, and HA-UB were transfected into HEK-293T cells and ubiquitination modification was detected by Western Blot. I Transfection of K63- and K48-linked ubiquitination and indicated plasmids followed by Western Blot analysis. J Transfection of plasmids overexpressing truncated RING domain of TRIM21 and indicated plasmids followed by Western Blot analysis. K Molecular docking and predicted binding sites of TRIM21 and ALKBH5 based on protein sequences obtained from the PDB database. L Mass spectrometry analysis suggests that the ubiquitination site of ALKBH5 may be located at K147. M Transfection of plasmids overexpressing ALKBH5 ubiquitination site mutants and indicated plasmids followed by Western Blot analysis. N Nuclear and cytoplasmic fractionation followed by Western blot analysis showing mutation of ALKBH5's K147 ubiquitination site suppressed ALKBH5 translocation to the nucleus (ns: none significant; * p < 0.05; ** p < 0.01; *** p < 0.001).

Article Snippet: The primary Abs against human LIAS (11577-1-AP; Proteintech; concentration: 1:1000), human TRIM21 (12108-1-AP; Proteintech; concentration: 1:1000), human ALKBH5 (16837-1-AP; Proteintech; concentration: 1:1000), human IGF2BP3 (A23295; Abclonal; concentration: 1:1000), DYKDDDDK Tag (14793; Cell Signaling Technology; concentration: 1:1000), Myc-Tag (2278; Cell Signaling Technology; concentration: 1:1000) and HA-Tag (3724; Cell Signaling Technology; concentration: 1:1000) were diluted according to the instructions.

Techniques: Expressing, Immunoprecipitation, Staining, Mass Spectrometry, Co-Immunoprecipitation Assay, Western Blot, Binding Assay, In Vitro, Transfection, Ubiquitin Proteomics, Modification, Fractionation, Mutagenesis, Translocation Assay

Journal: Communications Biology

Article Title: TRIM21 promotes K63-linked ubiquitination of ALKBH5 and suppresses cuproptosis via down-regulation of LIAS in esophageal squamous cell carcinoma

doi: 10.1038/s42003-025-09201-6

Figure Lengend Snippet: A Heat map illustrating genes downregulated upon ALKBH5 overexpression detected by RNA sequencing. B KEGG pathway analysis of differentially expressed genes (logFC > 1). C GSEA analysis confirmed significant correlations between RNA degradation pathways and ALKBH5 expression. D RNA Immunoprecipitation (RIP) of ALKBH5 followed by qRT-PCR ( n = 3 independent experiments). E RNA Immunoprecipitation (RIP) of ALKBH5 followed by PCR. F qRT-PCR assays for RNA stability showed that knocking down TRIM21 increased LIAS mRNA stability ( n = 3 independent experiments). G qRT-PCR assays for RNA stability showed that knocking down ALKBH5 increased LIAS mRNA stability ( n = 3 independent experiments). H Measurement of m6A modification levels on LIAS through m6A-IP after knocking down or overexpression of TRIM21 ( n = 3 independent experiments). I Measurement of m6A modification levels on LIAS through m6A-IP after knocking down or overexpression of ALKBH5 ( n = 3 independent experiments). J RIP-qPCR for IGF2BP3 revealed binding of LIAS mRNA to IGF2BP3 ( n = 3 independent experiments). K Knocking down IGF2BP3 notably decreased both the RNA expression levels of LIAS, and this effect was partially rescued by concurrent knockdown of ALKBH5 ( n = 3 independent experiments). L Knocking down IGF2BP3 notably decreased both the protein levels of LIAS, and this effect was partially rescued by concurrent knockdown of ALKBH5 ( n = 3 independent experiments). M qRT-PCR showed LIAS mRNA stability was reduced after IGF2BP3 knockdown ( n = 3 independent experiments). Error bars indicate standard deviations (ns: none significant; * p < 0.05; ** p < 0.01; *** p < 0.001).

Article Snippet: The primary Abs against human LIAS (11577-1-AP; Proteintech; concentration: 1:1000), human TRIM21 (12108-1-AP; Proteintech; concentration: 1:1000), human ALKBH5 (16837-1-AP; Proteintech; concentration: 1:1000), human IGF2BP3 (A23295; Abclonal; concentration: 1:1000), DYKDDDDK Tag (14793; Cell Signaling Technology; concentration: 1:1000), Myc-Tag (2278; Cell Signaling Technology; concentration: 1:1000) and HA-Tag (3724; Cell Signaling Technology; concentration: 1:1000) were diluted according to the instructions.

Techniques: Over Expression, RNA Sequencing, Expressing, RNA Immunoprecipitation, Quantitative RT-PCR, Modification, Binding Assay, RNA Expression, Knockdown

Journal: Communications Biology

Article Title: TRIM21 promotes K63-linked ubiquitination of ALKBH5 and suppresses cuproptosis via down-regulation of LIAS in esophageal squamous cell carcinoma

doi: 10.1038/s42003-025-09201-6

Figure Lengend Snippet: A Western blot showing knockdown of TRIM21 significantly increased LIAS expression without affecting ALKBH5 expression. B Nuclear and cytoplasmic fractionation assays followed by Western Blot analysis showed decreased ALKBH5 nuclear localization upon TRIM21 knockdown. C Immunofluorescence staining (IF) demonstrating that knockdown of TRIM21 supresses the nucleocytoplasmic trafficking of ALKBH5. D Apoptosis experiments illustrated that ESCC cells knockdown of TRIM21 or ALKBH5 both increased the sensitivity of cells to cuproptosis, while simultaneous knockout of LIAS attenuated or even counteracted this effect. E CCK8 assays showing that knockdown of TRIM21 inhibited the viability of tumor cells under elesclomol-Cu 2+ stimulation, and this effect could be reversed by LIAS knockdown ( n = 3 independent experiments). F CCK8 assays showing that ESCC cells became more susceptible to elesclomol-Cu 2+ -induced cuproptosis after mutation on ubiquitination site K147 (K147R) compared to Wild Type (WT) ( n = 3 independent experiments). Error bars indicate standard deviations (ns: none significant; * p < 0.05; ** p < 0.01; *** p < 0.001).

Article Snippet: The primary Abs against human LIAS (11577-1-AP; Proteintech; concentration: 1:1000), human TRIM21 (12108-1-AP; Proteintech; concentration: 1:1000), human ALKBH5 (16837-1-AP; Proteintech; concentration: 1:1000), human IGF2BP3 (A23295; Abclonal; concentration: 1:1000), DYKDDDDK Tag (14793; Cell Signaling Technology; concentration: 1:1000), Myc-Tag (2278; Cell Signaling Technology; concentration: 1:1000) and HA-Tag (3724; Cell Signaling Technology; concentration: 1:1000) were diluted according to the instructions.

Techniques: Western Blot, Knockdown, Expressing, Fractionation, Immunofluorescence, Staining, Knock-Out, Mutagenesis, Ubiquitin Proteomics

Journal: Communications Biology

Article Title: TRIM21 promotes K63-linked ubiquitination of ALKBH5 and suppresses cuproptosis via down-regulation of LIAS in esophageal squamous cell carcinoma

doi: 10.1038/s42003-025-09201-6

Figure Lengend Snippet: A Subcutaneous xenograft tumor model in nude mice using the esophageal squamous cell carcinoma cell line ECA109, mice were injected with elesclomol in both control (Ctrl) and TRIM21 knockdown (shTRIM21) groups. B Tumor sizes and weights are depicted in the figure ( n = 4 independent experiments). C Proteins from the tumor tissues were extracted for Western Blot analysis, which revealed TRIM21, LIAS protein expression levels. D RNA from the tumor tissues was extracted for qRT-PCR analysis, which revealed TRIM21, LIAS, ALKBH5 mRNA expression levels ( n = 3 independent experiments). E Immunostaining for TRIM21, Ki-67, and TUNEL was performed across the groups. F Quantification of ( E ) ( n = 3 independent experiments). Error bars indicate standard deviations (ns: none significant; * p < 0.05; ** p < 0.01; *** p < 0.001).

Article Snippet: The primary Abs against human LIAS (11577-1-AP; Proteintech; concentration: 1:1000), human TRIM21 (12108-1-AP; Proteintech; concentration: 1:1000), human ALKBH5 (16837-1-AP; Proteintech; concentration: 1:1000), human IGF2BP3 (A23295; Abclonal; concentration: 1:1000), DYKDDDDK Tag (14793; Cell Signaling Technology; concentration: 1:1000), Myc-Tag (2278; Cell Signaling Technology; concentration: 1:1000) and HA-Tag (3724; Cell Signaling Technology; concentration: 1:1000) were diluted according to the instructions.

Techniques: Injection, Control, Knockdown, Western Blot, Expressing, Quantitative RT-PCR, Immunostaining, TUNEL Assay

Journal: Communications Biology

Article Title: TRIM21 promotes K63-linked ubiquitination of ALKBH5 and suppresses cuproptosis via down-regulation of LIAS in esophageal squamous cell carcinoma

doi: 10.1038/s42003-025-09201-6

Figure Lengend Snippet: A Co-immunoprecipitation assays revealing that OGT and ALKBH5 can interact with each other. B Myc-OGT plasmid, along with HA-UB and Flag-ALKBH5, was transfected into HEK-293T cells, western blot showed overexpression of myc-OGT promoted the ubiquitination of ALKBH5. C Western blot showing co-transfection of TRIM21 with OGT augmented ALKBH5 ubiquitination. D Co-IP followed by western blot showing overexpression of OGT led to an increase in O-glycosylation of ALKBH5. E Co-IP followed by western blot showing knockdown of OGT led to the decrease in the binding of ALKBH5 and TRIM21, also induced upregulation of LIAS. F Co-IP followed by western blot analysis showing reduced ALKBH5 O-glycosylation and interaction with TRIM21 upon introducing the OGT inhibitor OSMI-1 in different concentrations. G A significant negative correlation in protein expression between the co-expression of OGT and TRIM21 with LIAS, Lipoylated-DLAT (Lip-DLAT), and Lipoylated-DLST (Lip-DLST) expression was observed by western blot, upon OSMI-1 treatment, the expressions of Lip-DLAT, Lip-DLST, and LIAS were restored. H Protein expression showing negative correlation between OGT and TRIM21 with LIAS, Lipoylated-DLAT (Lip-DLAT), and Lipoylated-DLST (Lip-DLST) after OGT or TRIM21 knockdown. I Following treatment with a gradient of OSMI-1 concentrations, nuclear-cytoplasmic fractionation experiments showed that OSMI-1 inhibited ALKBH5's accumulation in the nucleus.

Article Snippet: The primary Abs against human LIAS (11577-1-AP; Proteintech; concentration: 1:1000), human TRIM21 (12108-1-AP; Proteintech; concentration: 1:1000), human ALKBH5 (16837-1-AP; Proteintech; concentration: 1:1000), human IGF2BP3 (A23295; Abclonal; concentration: 1:1000), DYKDDDDK Tag (14793; Cell Signaling Technology; concentration: 1:1000), Myc-Tag (2278; Cell Signaling Technology; concentration: 1:1000) and HA-Tag (3724; Cell Signaling Technology; concentration: 1:1000) were diluted according to the instructions.

Techniques: Immunoprecipitation, Plasmid Preparation, Transfection, Western Blot, Over Expression, Ubiquitin Proteomics, Cotransfection, Co-Immunoprecipitation Assay, Glycoproteomics, Knockdown, Binding Assay, Expressing, Fractionation

Journal: eBioMedicine

Article Title: A replicating RNA vaccine confers protection against Crimean-Congo hemorrhagic fever in cynomolgus macaques

doi: 10.1016/j.ebiom.2025.105698

Figure Lengend Snippet: repNP is immunogenic in cynomolgus macaques. Groups of cynomolgus macaques were sham-vaccinated or vaccinated with repNP-alone or repNP + repGc (a). CCHFV-specific IgG to whole-virus antigen (b) or recombinant antigen (c) was quantified by ELISA. CCHFV-specific IFNγ responses at day −14 to overlapping peptide pools spanning the CCHFV GPC (G1-14) or NP (N1-5) was measured by ELISpot (d). The isotype of CCHFV NP-specific antibody was measured (e) and the ability of NP-specific antibody to bind Fc-receptors, TRIM21 or complement component C1q measured (f). Line connects means (b,d,e,f). (c) Data presented as mean and SD.

Article Snippet: The bound antigen-specific antibodies were subsequently stained with PE-labelled tetramerized recombinant Fc receptors rhesus-FcγR2A (Duke Protein Production Facility, DPPF), rhesus FcγR3 (DPPF), human-FcγR2B (DPPF), human-FcRn (DPPF), human-C1q (Sigma C1740) and human-TRIM21 (Sino Biological 18010-H07B) for 1 h at room temperature, shaking at 800 rpm.

Techniques: Virus, Recombinant, Enzyme-linked Immunosorbent Assay, Enzyme-linked Immunospot

Journal: eBioMedicine

Article Title: A replicating RNA vaccine confers protection against Crimean-Congo hemorrhagic fever in cynomolgus macaques

doi: 10.1016/j.ebiom.2025.105698

Figure Lengend Snippet: Vaccinated animals develop anamnestic antibody responses to the NP and Gc. (a) IgG to recombinant NP, Gn and Gc was measured by ELISA at indicated timepoints relative to CCHFV challenge. (b) NP specific antibody was evaluated for its isotype and ability to bind Fc-receptors, C1q or TRIM21. Day 0 data is duplicated from Fig. 1 for comparison. (c) An IFNγ ELISpot was used to quantify anamnestic IFNγ responses to CCHFV peptides in PBMCs collected from animals at day 6 PI. (b,c) Line indicates mean.

Article Snippet: The bound antigen-specific antibodies were subsequently stained with PE-labelled tetramerized recombinant Fc receptors rhesus-FcγR2A (Duke Protein Production Facility, DPPF), rhesus FcγR3 (DPPF), human-FcγR2B (DPPF), human-FcRn (DPPF), human-C1q (Sigma C1740) and human-TRIM21 (Sino Biological 18010-H07B) for 1 h at room temperature, shaking at 800 rpm.

Techniques: Recombinant, Enzyme-linked Immunosorbent Assay, Comparison, Enzyme-linked Immunospot